Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-asn | Not Available | Not Available | Positive | 376530 - 376606 | Not Available |
| gsph/fimt family pseudopilin | BJD13_RS03330 | Not Available | Negative | 376653 - 377195 | 19087.0 |
| excinuclease abc subunit uvrb | BJD13_RS03335 | Not Available | Positive | 377337 - 379358 | 75968.7 |
| Trna-val | Not Available | Not Available | Positive | 379457 - 379531 | Not Available |
| hypothetical protein | BJD13_RS03350 | Not Available | Positive | 380074 - 380316 | 8887.48 |
| type iv secretory system conjugative dna transfer family protein | BJD13_RS03355 | Not Available | Positive | 380353 - 382026 | 62034.4 |
| tcpq domain-containing protein | BJD13_RS03360 | Not Available | Positive | 382359 - 382769 | 14411.2 |
| virb8 family protein | BJD13_RS03365 | Not Available | Positive | 382895 - 383926 | 36857.1 |
| trbg/virb9 family p-type conjugative transfer protein | BJD13_RS03370 | Not Available | Positive | 383923 - 384690 | 29367.0 |
| trbi/virb10 family protein | BJD13_RS03375 | Not Available | Positive | 384687 - 385856 | 41567.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
