Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysozyme inhibitor lpri family protein | BJD13_RS22720 | Not Available | Positive | 4728241 - 4729398 | 41907.7 |
| duf3014 domain-containing protein | BJD13_RS22725 | Not Available | Positive | 4729693 - 4730511 | 29343.0 |
| glutathione s-transferase | BJD13_RS22730 | Not Available | Negative | 4730738 - 4731445 | 26241.4 |
| giy-yig nuclease family protein | BJD13_RS22735 | Not Available | Negative | 4731490 - 4731816 | 12016.2 |
| nfed family protein | BJD13_RS25660 | Not Available | Positive | 4731996 - 4732443 | 15255.1 |
| atp-dependent chaperone clpb | BJD13_RS22750 | Not Available | Positive | 4732804 - 4735389 | 95599.7 |
| tonb-dependent vitamin b12 receptor | BJD13_RS22755 | Not Available | Positive | 4735873 - 4737750 | 67391.8 |
| hypothetical protein | BJD13_RS22760 | Not Available | Positive | 4738030 - 4738623 | 21542.3 |
| hypothetical protein | BJD13_RS22765 | Not Available | Positive | 4738623 - 4739234 | 21314.3 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | BJD13_RS22770 | Not Available | Positive | 4739231 - 4739842 | 22354.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
