Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol-disulfide oxidoreductase dcc family protein | BJD13_RS22670 | Not Available | Positive | 4711944 - 4712378 | 16314.8 |
| methyl-accepting chemotaxis protein | BJD13_RS22675 | Not Available | Negative | 4712581 - 4714449 | 66041.6 |
| glucose/quinate/shikimate family membrane-bound pqq-dependent dehydrogenase | BJD13_RS22680 | Not Available | Negative | 4715164 - 4717602 | 86864.0 |
| alpha,alpha-trehalose-phosphate synthase (udp-forming) | BJD13_RS22685 | Not Available | Negative | 4718233 - 4719600 | 50834.9 |
| glycoside hydrolase family 15 protein | BJD13_RS22690 | Not Available | Negative | 4719597 - 4721375 | 67254.5 |
| trehalose-phosphatase | BJD13_RS22695 | Not Available | Negative | 4721424 - 4722182 | 27048.1 |
| tonb-dependent receptor plug domain-containing protein | BJD13_RS22700 | Not Available | Negative | 4722331 - 4724766 | 87744.3 |
| duf3574 domain-containing protein | BJD13_RS22705 | Not Available | Positive | 4724989 - 4725462 | 17306.6 |
| xac2610-related protein | BJD13_RS22710 | Not Available | Positive | 4725429 - 4726493 | 38711.0 |
| hypothetical protein | BJD13_RS22715 | Not Available | Positive | 4726631 - 4728232 | 55416.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
