Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adp-forming succinate--coa ligase subunit beta | BJD13_RS22620 | Not Available | Positive | 4702796 - 4703965 | 41427.9 |
| succinate--coa ligase subunit alpha | BJD13_RS22625 | Not Available | Positive | 4703990 - 4704865 | 29559.0 |
| ribbon-helix-helix domain-containing protein | BJD13_RS22630 | Not Available | Positive | 4705096 - 4705380 | 10282.0 |
| type ii toxin-antitoxin system rele/pare family toxin | BJD13_RS22635 | Not Available | Positive | 4705384 - 4705686 | 11039.3 |
| nad+ synthase | BJD13_RS22640 | Not Available | Positive | 4705686 - 4707341 | 59718.8 |
| hypothetical protein | BJD13_RS25490 | Not Available | Negative | 4707360 - 4708337 | 35861.5 |
| outer membrane protein assembly factor bamd | BJD13_RS22650 | Not Available | Negative | 4708618 - 4709499 | 33525.5 |
| 23s rrna pseudouridine(1911/1915/1917) synthase rlud | BJD13_RS22655 | Not Available | Positive | 4709621 - 4710616 | 36329.6 |
| peptidoglycan editing factor pgef | BJD13_RS22660 | Not Available | Positive | 4710618 - 4711430 | 28537.9 |
| duf4166 domain-containing protein | BJD13_RS22665 | Not Available | Positive | 4711433 - 4711957 | 20011.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
