Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS22515 | Not Available | Positive | 4678543 - 4678935 | 14403.5 |
| h-ns family nucleoid-associated regulatory protein | BJD13_RS22520 | Not Available | Positive | 4679026 - 4679418 | 14614.2 |
| glycogen debranching protein glgx | BJD13_RS22530 | Not Available | Negative | 4680040 - 4682172 | 80313.4 |
| 30s ribosomal protein s6--l-glutamate ligase | BJD13_RS22535 | Not Available | Positive | 4682643 - 4683560 | 32673.6 |
| hypothetical protein | BJD13_RS22540 | Not Available | Positive | 4683769 - 4684212 | 16522.7 |
| response regulator transcription factor | BJD13_RS22545 | Not Available | Positive | 4684238 - 4684915 | 25023.1 |
| sensor histidine kinase | BJD13_RS22550 | Not Available | Positive | 4684908 - 4686242 | 49713.6 |
| dephospho-coa kinase | BJD13_RS22555 | Not Available | Negative | 4686311 - 4686916 | 21660.2 |
| prepilin peptidase | BJD13_RS22560 | Not Available | Negative | 4686930 - 4687793 | 31729.5 |
| type ii secretion system f family protein | BJD13_RS22565 | Not Available | Negative | 4687800 - 4689062 | 45799.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
