Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS25655 | Not Available | Negative | 4669639 - 4669962 | 12231.7 |
| hypothetical protein | BJD13_RS22470 | Not Available | Negative | 4670072 - 4670347 | 10091.7 |
| rieske (2fe-2s) protein | BJD13_RS22475 | Not Available | Positive | 4670606 - 4670947 | 12066.5 |
| slc13 family permease | BJD13_RS22480 | Not Available | Negative | 4671008 - 4672870 | 66709.8 |
| trna (guanosine(46)-n7)-methyltransferase trmb | BJD13_RS22485 | Not Available | Negative | 4672936 - 4673721 | 29436.6 |
| thiazole synthase | BJD13_RS22490 | Not Available | Negative | 4673977 - 4674771 | 27953.9 |
| sulfur carrier protein this | BJD13_RS22495 | Not Available | Negative | 4674821 - 4675021 | 7085.51 |
| autotransporter domain-containing esterase | BJD13_RS22500 | Not Available | Positive | 4675210 - 4676994 | 62214.5 |
| Trna-gly | Not Available | Not Available | Positive | 4677113 - 4677186 | Not Available |
| thermonuclease family protein | BJD13_RS22510 | Not Available | Positive | 4677740 - 4678432 | 25622.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
