Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trmh family rna methyltransferase | BJD13_RS22415 | Not Available | Positive | 4652095 - 4653012 | 31785.0 |
| nfed family protein | BJD13_RS22420 | Not Available | Positive | 4653012 - 4654515 | 52703.4 |
| neprosin family prolyl endopeptidase | BJD13_RS22425 | Not Available | Negative | 4654566 - 4655909 | 47771.9 |
| glycoside hydrolase family 97 protein | BJD13_RS22430 | Not Available | Negative | 4656354 - 4658318 | 72798.4 |
| glycoside hydrolase family 2 | BJD13_RS22435 | Not Available | Positive | 4658537 - 4662004 | 125963.0 |
| tonb-dependent receptor | BJD13_RS22440 | Not Available | Positive | 4662145 - 4665081 | 106941.0 |
| laci family dna-binding transcriptional regulator | BJD13_RS22445 | Not Available | Negative | 4665452 - 4666504 | 36819.6 |
| m28 family peptidase | BJD13_RS22450 | Not Available | Negative | 4666860 - 4668278 | 48904.7 |
| large-conductance mechanosensitive channel protein mscl | BJD13_RS22455 | Not Available | Negative | 4668402 - 4668833 | 15393.3 |
| fumarylacetoacetate hydrolase family protein | BJD13_RS22460 | Not Available | Negative | 4668894 - 4669607 | 25287.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
