Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| assimilatory sulfite reductase (nadph) hemoprotein subunit | BJD13_RS22365 | Not Available | Negative | 4634991 - 4636697 | 62386.1 |
| assimilatory sulfite reductase (nadph) flavoprotein subunit | BJD13_RS22370 | Not Available | Negative | 4636806 - 4638653 | 66607.1 |
| sulfate adenylyltransferase subunit cysd | BJD13_RS22375 | Not Available | Positive | 4638833 - 4639741 | 34148.1 |
| sulfate adenylyltransferase subunit cysn | BJD13_RS22380 | Not Available | Positive | 4639804 - 4641717 | 69658.9 |
| Ncrna_class:other | Not Available | Not Available | Positive | 4641779 - 4641852 | Not Available |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS22390 | Not Available | Positive | 4642121 - 4643191 | 38106.6 |
| efflux rnd transporter permease subunit | BJD13_RS22395 | Not Available | Positive | 4643188 - 4646313 | 112470.0 |
| m1 family metallopeptidase | BJD13_RS22400 | Not Available | Positive | 4646666 - 4649341 | 96030.3 |
| hypothetical protein | BJD13_RS22405 | Not Available | Negative | 4649666 - 4650643 | 35129.8 |
| gnat family n-acetyltransferase | BJD13_RS22410 | Not Available | Positive | 4651237 - 4651806 | 21016.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
