Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen-iii c-methyltransferase | BJD13_RS22315 | Not Available | Negative | 4624927 - 4626129 | 41927.5 |
| lysr family transcriptional regulator | BJD13_RS22320 | Not Available | Positive | 4626294 - 4627277 | 35492.6 |
| hypothetical protein | BJD13_RS22325 | Not Available | Positive | 4627286 - 4627567 | 10117.9 |
| Ncrna_class:other | Not Available | Not Available | Positive | 4627583 - 4627656 | Not Available |
| hypothetical protein | BJD13_RS24820 | Not Available | Positive | 4627651 - 4627923 | 9707.52 |
| sensor histidine kinase | BJD13_RS22340 | Not Available | Negative | 4628406 - 4629602 | 43900.2 |
| duf2946 family protein | BJD13_RS22345 | Not Available | Positive | 4629906 - 4630343 | 15284.1 |
| tonb-dependent receptor | BJD13_RS22350 | Not Available | Positive | 4630538 - 4632541 | 73615.2 |
| pepsy-associated tm helix domain-containing protein | BJD13_RS22355 | Not Available | Positive | 4632541 - 4634142 | 58245.2 |
| phosphoadenylyl-sulfate reductase | BJD13_RS22360 | Not Available | Negative | 4634269 - 4634994 | 27675.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
