Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS22265 | Not Available | Positive | 4611916 - 4612386 | 16772.0 |
| duf2339 domain-containing protein | BJD13_RS22270 | Not Available | Positive | 4612582 - 4615413 | 99307.2 |
| duf3999 domain-containing protein | BJD13_RS22275 | Not Available | Positive | 4615410 - 4616768 | 48680.4 |
| phosphoglycerate kinase | BJD13_RS22280 | Not Available | Positive | 4617093 - 4618268 | 40757.9 |
| had family hydrolase | BJD13_RS22285 | Not Available | Positive | 4618265 - 4618909 | 23280.7 |
| pyruvate kinase | BJD13_RS22290 | Not Available | Positive | 4619168 - 4620634 | 52329.0 |
| class i fructose-bisphosphate aldolase | BJD13_RS22295 | Not Available | Positive | 4621204 - 4622208 | 36277.6 |
| o-acetyl-adp-ribose deacetylase | BJD13_RS22300 | Not Available | Negative | 4622424 - 4622963 | 19791.7 |
| methyltransferase family protein | BJD13_RS22305 | Not Available | Negative | 4623160 - 4623666 | 18760.3 |
| cysteine synthase a | BJD13_RS22310 | Not Available | Negative | 4623951 - 4624910 | 34085.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
