Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | BJD13_RS03280 | Not Available | Positive | 363886 - 367110 | 117360.0 |
| nucleotide 5'-monophosphate nucleosidase ppnn | BJD13_RS03285 | Not Available | Positive | 367217 - 368602 | 50695.1 |
| sensor histidine kinase | BJD13_RS03290 | Not Available | Negative | 368584 - 369528 | 34139.3 |
| gsph/fimt family pseudopilin | BJD13_RS03295 | Not Available | Positive | 369825 - 370328 | 16955.5 |
| type iv pilus modification protein pilv | BJD13_RS03300 | Not Available | Positive | 370350 - 370802 | 15870.2 |
| pilw family protein | BJD13_RS03305 | Not Available | Positive | 370799 - 371587 | 28306.2 |
| pilw family protein | BJD13_RS25325 | Not Available | Positive | 371548 - 371772 | 7741.05 |
| pilx n-terminal domain-containing pilus assembly protein | BJD13_RS03310 | Not Available | Positive | 371769 - 372341 | 20157.1 |
| pilus assembly protein | BJD13_RS03315 | Not Available | Positive | 372351 - 376061 | 132027.0 |
| type iv pilin protein | BJD13_RS03320 | Not Available | Positive | 376061 - 376471 | 14570.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
