Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dicarboxylate/amino acid:cation symporter | BJD13_RS22165 | Not Available | Positive | 4586468 - 4587748 | 44952.2 |
| transketolase | BJD13_RS22170 | Not Available | Positive | 4587950 - 4589950 | 72536.4 |
| ferric-rhodotorulic acid/ferric-coprogen receptor fhue | BJD13_RS22175 | Not Available | Positive | 4590765 - 4592948 | 80209.8 |
| m23 family metallopeptidase | BJD13_RS22180 | Not Available | Negative | 4593417 - 4594136 | 24822.4 |
| l,d-transpeptidase family protein | BJD13_RS22185 | Not Available | Negative | 4594139 - 4595068 | 32449.5 |
| tonb-dependent receptor | BJD13_RS22190 | Not Available | Negative | 4595446 - 4598160 | 97640.1 |
| phosphatidylinositol-specific phospholipase c1-like protein | BJD13_RS22195 | Not Available | Negative | 4598283 - 4599458 | 42568.8 |
| acetyl-coa hydrolase/transferase c-terminal domain-containing protein | BJD13_RS22200 | Not Available | Negative | 4599594 - 4601552 | 70776.1 |
| blai/meci/copy family transcriptional regulator | BJD13_RS22205 | Not Available | Positive | 4601716 - 4602081 | 13362.1 |
| tonb family protein | BJD13_RS22210 | Not Available | Positive | 4602071 - 4603369 | 46688.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
