Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit omega | BJD13_RS22060 | Not Available | Positive | 4561738 - 4562037 | 11143.2 |
| rela/spot family protein | BJD13_RS22065 | Not Available | Positive | 4562166 - 4564337 | 80836.2 |
| rida family protein | BJD13_RS22070 | Not Available | Positive | 4564417 - 4564797 | 13180.7 |
| atp-dependent dna helicase recg | BJD13_RS22075 | Not Available | Positive | 4564818 - 4566971 | 77561.4 |
| nucleoside hydrolase | BJD13_RS22080 | Not Available | Positive | 4567108 - 4568046 | 33437.9 |
| type b 50s ribosomal protein l31 | BJD13_RS22085 | Not Available | Positive | 4568118 - 4568360 | 9364.07 |
| citrate synthase | BJD13_RS22090 | Not Available | Positive | 4568590 - 4569879 | 47835.3 |
| hypothetical protein | BJD13_RS22095 | Not Available | Negative | 4570128 - 4570778 | 24472.9 |
| penicillin-binding protein 1a | BJD13_RS22100 | Not Available | Negative | 4571089 - 4573611 | 91817.1 |
| pilus assembly protein pilm | BJD13_RS22105 | Not Available | Positive | 4573729 - 4574787 | 37608.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
