Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sirb1 family protein | BJD13_RS21960 | Not Available | Negative | 4544882 - 4545763 | 32954.4 |
| duf192 domain-containing protein | BJD13_RS21965 | Not Available | Negative | 4545932 - 4546381 | 16576.0 |
| ribose-5-phosphate isomerase rpia | BJD13_RS21970 | Not Available | Negative | 4546544 - 4547191 | 22888.8 |
| eve domain-containing protein | BJD13_RS21975 | Not Available | Negative | 4547289 - 4547765 | 17903.2 |
| 5-formyltetrahydrofolate cyclo-ligase | BJD13_RS21980 | Not Available | Negative | 4547762 - 4548352 | 21526.8 |
| Ncrna_class:other | Not Available | Not Available | Positive | 4548679 - 4548862 | Not Available |
| cell division protein zapa | BJD13_RS21990 | Not Available | Negative | 4548958 - 4549257 | 11191.3 |
| tigr02449 family protein | BJD13_RS21995 | Not Available | Negative | 4549254 - 4549475 | 8364.01 |
| yeca family protein | BJD13_RS22000 | Not Available | Positive | 4549711 - 4550253 | 19261.4 |
| aminopeptidase p n-terminal domain-containing protein | BJD13_RS22005 | Not Available | Positive | 4550262 - 4551590 | 49366.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
