Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome | BJD13_RS21900 | Not Available | Positive | 4531682 - 4532107 | 14906.8 |
| rida family protein | BJD13_RS21905 | Not Available | Positive | 4532132 - 4532635 | 17633.4 |
| pyridoxal phosphate-dependent aminotransferase | BJD13_RS21910 | Not Available | Positive | 4532666 - 4533868 | 42507.2 |
| azurin | BJD13_RS21915 | Not Available | Positive | 4534079 - 4534528 | 15870.3 |
| luxr c-terminal-related transcriptional regulator | BJD13_RS21920 | Not Available | Negative | 4534610 - 4537381 | 101695.0 |
| Ncrna_class:other | Not Available | Not Available | Positive | 4537696 - 4537771 | Not Available |
| glutamate-1-semialdehyde 2,1-aminomutase | BJD13_RS21930 | Not Available | Negative | 4538226 - 4539515 | 44998.8 |
| tonb-dependent receptor plug domain-containing protein | BJD13_RS25090 | Not Available | Positive | 4539818 - 4543000 | 114032.0 |
| thiamine phosphate synthase | BJD13_RS21950 | Not Available | Negative | 4543851 - 4544474 | 21586.8 |
| rubredoxin | BJD13_RS21955 | Not Available | Positive | 4544498 - 4544737 | 8991.38 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
