Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | BJD13_RS21800 | Not Available | Positive | 4504578 - 4505471 | 32997.1 |
| tonb-dependent receptor plug domain-containing protein | BJD13_RS21805 | Not Available | Positive | 4505520 - 4508363 | 102443.0 |
| hdod domain-containing protein | BJD13_RS21810 | Not Available | Negative | 4508778 - 4509926 | 40633.0 |
| inorganic diphosphatase | BJD13_RS21815 | Not Available | Negative | 4510040 - 4510576 | 19714.6 |
| hypothetical protein | BJD13_RS21820 | Not Available | Positive | 4510774 - 4511256 | 17631.1 |
| sodium-translocating pyrophosphatase | BJD13_RS21825 | Not Available | Negative | 4511546 - 4513573 | 69285.4 |
| hypothetical protein | BJD13_RS21830 | Not Available | Positive | 4513825 - 4514349 | 18524.3 |
| 6-phosphofructokinase | BJD13_RS21835 | Not Available | Negative | 4514595 - 4515851 | 44636.4 |
| adenylate kinase | BJD13_RS21840 | Not Available | Positive | 4516011 - 4516574 | 19986.1 |
| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligase | BJD13_RS21845 | Not Available | Positive | 4516927 - 4518294 | 48409.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
