Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-isopropylmalate synthase | BJD13_RS21745 | Not Available | Negative | 4486134 - 4487696 | 56305.9 |
| threonine dehydratase | BJD13_RS21750 | Not Available | Negative | 4487693 - 4488811 | 39367.2 |
| act domain-containing protein | BJD13_RS21755 | Not Available | Negative | 4488887 - 4489144 | 9405.39 |
| acetolactate synthase 2 catalytic subunit | BJD13_RS21760 | Not Available | Negative | 4489128 - 4490849 | 60808.4 |
| ketol-acid reductoisomerase | BJD13_RS21765 | Not Available | Negative | 4490893 - 4491894 | 35968.9 |
| gamma-glutamyltransferase | BJD13_RS21770 | Not Available | Positive | 4492546 - 4494255 | 61589.5 |
| methyl-accepting chemotaxis protein | BJD13_RS21775 | Not Available | Positive | 4494316 - 4496172 | 65681.3 |
| tonb-dependent receptor | BJD13_RS21780 | Not Available | Negative | 4496436 - 4499207 | 100084.0 |
| phosphomethylpyrimidine synthase thic | BJD13_RS21790 | Not Available | Positive | 4499827 - 4501704 | 69216.6 |
| winged helix-turn-helix domain-containing protein | BJD13_RS21795 | Not Available | Positive | 4502128 - 4504467 | 83779.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
