Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyribonucleotide nucleotidyltransferase | BJD13_RS03230 | Not Available | Positive | 354262 - 356376 | 75514.1 |
| duf2272 domain-containing protein | BJD13_RS03235 | Not Available | Negative | 356788 - 357840 | 37478.5 |
| carboxylating nicotinate-nucleotide diphosphorylase | BJD13_RS03240 | Not Available | Negative | 357904 - 358791 | 31367.7 |
| trm112 family protein | BJD13_RS03245 | Not Available | Negative | 358788 - 359057 | 9610.59 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | BJD13_RS03250 | Not Available | Positive | 359116 - 359619 | 17084.7 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | BJD13_RS03255 | Not Available | Positive | 359616 - 360761 | 40118.9 |
| superoxide dismutase | BJD13_RS03260 | Not Available | Negative | 360902 - 361480 | 21557.4 |
| grx4 family monothiol glutaredoxin | BJD13_RS03265 | Not Available | Positive | 361602 - 361922 | 11943.5 |
| sdr family nad(p)-dependent oxidoreductase | BJD13_RS03270 | Not Available | Positive | 361919 - 362662 | 25428.3 |
| yhgn family naat transporter | BJD13_RS03275 | Not Available | Positive | 362659 - 363258 | 21615.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
