Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lpxl/lpxp family kdo(2)-lipid iv(a) lauroyl/palmitoleoyl acyltransferase | BJD13_RS21690 | Not Available | Negative | 4472370 - 4473290 | 35020.6 |
| lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferase | BJD13_RS21700 | Not Available | Positive | 4473582 - 4474898 | 48654.1 |
| tolc family outer membrane protein | BJD13_RS21705 | Not Available | Negative | 4475166 - 4476548 | 49679.1 |
| protein-l-isoaspartate o-methyltransferase family protein | BJD13_RS21710 | Not Available | Negative | 4476569 - 4477225 | 24175.3 |
| tetr/acrr family transcriptional regulator | BJD13_RS21715 | Not Available | Negative | 4477354 - 4478007 | 23688.4 |
| ligand-binding sensor domain-containing diguanylate cyclase | BJD13_RS21720 | Not Available | Positive | 4478225 - 4481227 | 109735.0 |
| lysr family transcriptional regulator | BJD13_RS21725 | Not Available | Negative | 4481470 - 4482354 | 31498.3 |
| 3-isopropylmalate dehydratase large subunit | BJD13_RS21730 | Not Available | Positive | 4482475 - 4483914 | 51370.3 |
| 3-isopropylmalate dehydratase small subunit | BJD13_RS21735 | Not Available | Positive | 4483984 - 4484631 | 24209.5 |
| 3-isopropylmalate dehydrogenase | BJD13_RS21740 | Not Available | Positive | 4484722 - 4485795 | 38208.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
