Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| substrate-binding domain-containing protein | BJD13_RS21640 | Not Available | Negative | 4454825 - 4455604 | 27423.3 |
| mfs transporter | BJD13_RS21645 | Not Available | Negative | 4455601 - 4456950 | 47783.2 |
| pas-domain containing protein | BJD13_RS21650 | Not Available | Negative | 4457258 - 4459903 | 97319.0 |
| opro/oprp family phosphate-selective porin | BJD13_RS21655 | Not Available | Negative | 4460270 - 4461442 | 43325.8 |
| dicarboxylate/amino acid:cation symporter | BJD13_RS21660 | Not Available | Positive | 4461726 - 4463099 | 48110.4 |
| nadp-dependent malic enzyme | BJD13_RS21665 | Not Available | Positive | 4463296 - 4465605 | 83696.3 |
| gh92 family glycosyl hydrolase | BJD13_RS21670 | Not Available | Negative | 4465971 - 4469333 | 121419.0 |
| zinc-finger domain-containing protein | BJD13_RS21675 | Not Available | Positive | 4469646 - 4469843 | 7144.47 |
| glycosyltransferase | BJD13_RS21680 | Not Available | Positive | 4469854 - 4470966 | 40002.9 |
| o-antigen ligase family protein | BJD13_RS21685 | Not Available | Positive | 4470947 - 4472278 | 47020.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
