Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| citmhs family transporter | BJD13_RS21585 | Not Available | Negative | 4444457 - 4445785 | 47655.4 |
| opro/oprp family phosphate-selective porin | BJD13_RS21595 | Not Available | Negative | 4446012 - 4447205 | 44101.2 |
| response regulator | BJD13_RS21600 | Not Available | Positive | 4447460 - 4448161 | 25574.8 |
| sensor histidine kinase | BJD13_RS21605 | Not Available | Positive | 4448154 - 4449545 | 49950.5 |
| abc transporter substrate-binding protein | BJD13_RS21610 | Not Available | Positive | 4449545 - 4450594 | 38263.5 |
| response regulator | BJD13_RS21615 | Not Available | Positive | 4450806 - 4451444 | 22567.3 |
| atu4866 domain-containing protein | BJD13_RS21620 | Not Available | Negative | 4451669 - 4452037 | 13196.5 |
| nuclear transport factor 2 family protein | BJD13_RS21625 | Not Available | Negative | 4452049 - 4452594 | 19492.4 |
| aldo/keto reductase | BJD13_RS21630 | Not Available | Negative | 4452611 - 4453681 | 38886.5 |
| lysr family transcriptional regulator | BJD13_RS21635 | Not Available | Positive | 4453931 - 4454833 | 32686.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
