Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gh12 family glycosyl hydrolase domain-containing protein | BJD13_RS21480 | Not Available | Positive | 4419042 - 4419857 | 29762.8 |
| rhamnogalacturonan lyase b n-terminal domain-containing protein | BJD13_RS21485 | Not Available | Negative | 4420244 - 4421845 | 56676.1 |
| hypothetical protein | BJD13_RS21490 | Not Available | Negative | 4422218 - 4422544 | 12155.0 |
| amidohydrolase family protein | BJD13_RS21500 | Not Available | Negative | 4422838 - 4424118 | 44943.2 |
| amidohydrolase | BJD13_RS21505 | Not Available | Negative | 4424115 - 4425524 | 50121.5 |
| duf924 family protein | BJD13_RS21510 | Not Available | Positive | 4425658 - 4426224 | 21327.9 |
| hypothetical protein | BJD13_RS21515 | Not Available | Negative | 4426379 - 4427248 | 30827.6 |
| grx4 family monothiol glutaredoxin | BJD13_RS21520 | Not Available | Negative | 4427447 - 4428373 | 32924.1 |
| polysaccharide deacetylase family protein | BJD13_RS21525 | Not Available | Positive | 4428419 - 4429210 | 28987.3 |
| methyltransferase | BJD13_RS21530 | Not Available | Negative | 4429357 - 4430028 | 24430.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
