Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinamide riboside transporter pnuc | BJD13_RS21370 | Not Available | Negative | 4389527 - 4390102 | 21664.7 |
| tonb-dependent receptor | BJD13_RS21375 | Not Available | Negative | 4390283 - 4392445 | 79050.8 |
| phosphotransferase enzyme family protein | BJD13_RS21380 | Not Available | Negative | 4392477 - 4393634 | 42293.1 |
| glycosyltransferase family 2 protein | BJD13_RS21385 | Not Available | Positive | 4394238 - 4395077 | 30905.0 |
| hypothetical protein | BJD13_RS21390 | Not Available | Positive | 4395206 - 4396240 | 36623.7 |
| glycosyltransferase family 2 protein | BJD13_RS21395 | Not Available | Positive | 4396251 - 4398158 | 72121.3 |
| hypothetical protein | BJD13_RS21400 | Not Available | Positive | 4398208 - 4399503 | 44768.2 |
| glycoside hydrolase family 113 | BJD13_RS21405 | Not Available | Positive | 4399485 - 4400453 | 34630.3 |
| nicotinate phosphoribosyltransferase | BJD13_RS21410 | Not Available | Positive | 4400849 - 4402027 | 44864.1 |
| cellulose biosynthesis protein bcsd | BJD13_RS21415 | Not Available | Positive | 4402235 - 4402690 | 16708.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
