Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein xpsh | BJD13_RS21320 | Not Available | Positive | 4380185 - 4380694 | 18220.1 |
| type ii secretion system protein xpsi | BJD13_RS21325 | Not Available | Positive | 4380691 - 4381107 | 15418.7 |
| type ii secretion system protein j | BJD13_RS21330 | Not Available | Positive | 4381104 - 4381739 | 23113.0 |
| general secretion pathway protein gspk | BJD13_RS21335 | Not Available | Positive | 4381736 - 4382587 | 30239.9 |
| piln domain-containing protein | BJD13_RS21340 | Not Available | Positive | 4382584 - 4383705 | 41464.7 |
| type ii secretion system protein gspm | BJD13_RS21345 | Not Available | Positive | 4383689 - 4384342 | 23757.6 |
| type ii secretion system protein xpsn | BJD13_RS21350 | Not Available | Positive | 4384332 - 4385129 | 28107.6 |
| type ii secretion system secretin gspd | BJD13_RS21355 | Not Available | Positive | 4385126 - 4387429 | 79721.5 |
| glycosyltransferase family 2 protein | BJD13_RS21360 | Not Available | Positive | 4387426 - 4388265 | 29818.8 |
| utra domain-containing protein | BJD13_RS21365 | Not Available | Negative | 4388693 - 4389421 | 27166.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
