Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS25650 | Not Available | Positive | 4355113 - 4355348 | 8363.1 |
| dsbc family protein | BJD13_RS21265 | Not Available | Positive | 4355573 - 4356370 | 28104.7 |
| phosphoribosylformylglycinamidine synthase | BJD13_RS21275 | Not Available | Positive | 4356675 - 4360721 | 144515.0 |
| yada-like family protein | BJD13_RS21280 | Not Available | Positive | 4361369 - 4364518 | 100439.0 |
| s8 family peptidase | BJD13_RS21285 | Not Available | Positive | 4364621 - 4366504 | 63527.7 |
| espr-type extended signal peptide-containing protein | BJD13_RS21290 | Not Available | Positive | 4367043 - 4374116 | 220947.0 |
| diffusible signal factor-reguated s8 family serine peptidase | BJD13_RS21295 | Not Available | Positive | 4374340 - 4376223 | 63434.5 |
| type ii secretion system atpase gspe | BJD13_RS21300 | Not Available | Positive | 4376353 - 4378080 | 63925.4 |
| type ii secretion system protein xpsf | BJD13_RS21310 | Not Available | Positive | 4378256 - 4379473 | 44207.5 |
| type ii secretion system major pseudopilin gspg | BJD13_RS21315 | Not Available | Positive | 4379744 - 4380175 | 15103.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
