Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS25645 | Not Available | Negative | 4345073 - 4345262 | 6662.11 |
| valine--trna ligase | BJD13_RS21215 | Not Available | Negative | 4345298 - 4348219 | 110194.0 |
| dna polymerase iii subunit chi | BJD13_RS21220 | Not Available | Negative | 4348418 - 4348843 | 15944.0 |
| hypothetical protein | BJD13_RS21225 | Not Available | Negative | 4348843 - 4349169 | 11729.8 |
| leucyl aminopeptidase | BJD13_RS21230 | Not Available | Negative | 4349214 - 4350686 | 51124.1 |
| lps export abc transporter permease lptf | BJD13_RS21235 | Not Available | Positive | 4350794 - 4351876 | 39427.9 |
| lps export abc transporter permease lptg | BJD13_RS21240 | Not Available | Positive | 4351873 - 4352979 | 40884.5 |
| nfed family protein | BJD13_RS25480 | Not Available | Positive | 4352984 - 4353220 | 8447.58 |
| rdd family protein | BJD13_RS21250 | Not Available | Negative | 4353300 - 4353767 | 17849.0 |
| site-specific tyrosine recombinase xerd | BJD13_RS21255 | Not Available | Positive | 4354123 - 4355094 | 35822.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
