Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit l | BJD13_RS03180 | Not Available | Positive | 341569 - 343728 | 78862.4 |
| nadh-quinone oxidoreductase subunit m | BJD13_RS03185 | Not Available | Positive | 343749 - 345251 | 54373.8 |
| nadh-quinone oxidoreductase subunit nuon | BJD13_RS03190 | Not Available | Positive | 345288 - 346748 | 51276.0 |
| Trna-met | Not Available | Not Available | Positive | 346949 - 347025 | Not Available |
| ribosome maturation factor rimp | BJD13_RS03200 | Not Available | Positive | 347223 - 347813 | 21318.3 |
| transcription termination factor nusa | BJD13_RS03205 | Not Available | Positive | 347818 - 349329 | 55142.2 |
| translation initiation factor if-2 | BJD13_RS03210 | Not Available | Positive | 349425 - 352133 | 96017.9 |
| 30s ribosome-binding factor rbfa | BJD13_RS03215 | Not Available | Positive | 352278 - 352670 | 14561.1 |
| trna pseudouridine(55) synthase trub | BJD13_RS03220 | Not Available | Positive | 352750 - 353676 | 32710.6 |
| 30s ribosomal protein s15 | BJD13_RS03225 | Not Available | Positive | 353833 - 354093 | 10097.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
