Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubia family prenyltransferase | BJD13_RS21055 | Not Available | Negative | 4308636 - 4310024 | 51021.3 |
| lysylphosphatidylglycerol synthase transmembrane domain-containing protein | BJD13_RS21060 | Not Available | Negative | 4310127 - 4311113 | 35113.0 |
| electron transfer flavoprotein subunit alpha/fixb family protein | BJD13_RS21065 | Not Available | Negative | 4311129 - 4312073 | 31712.0 |
| electron transfer flavoprotein subunit beta/fixa family protein | BJD13_RS21070 | Not Available | Negative | 4312073 - 4312819 | 26453.2 |
| dtdp-glucose 4,6-dehydratase | BJD13_RS21075 | Not Available | Positive | 4313047 - 4314102 | 38365.2 |
| glucose-1-phosphate thymidylyltransferase rfba | BJD13_RS21080 | Not Available | Positive | 4314158 - 4315045 | 32668.0 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | BJD13_RS21085 | Not Available | Positive | 4315042 - 4315599 | 20441.2 |
| dtdp-4-dehydrorhamnose reductase | BJD13_RS21090 | Not Available | Positive | 4315596 - 4316495 | 32051.8 |
| nucleotide sugar dehydrogenase | BJD13_RS21095 | Not Available | Positive | 4316836 - 4318002 | 42959.6 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | BJD13_RS21100 | Not Available | Negative | 4318292 - 4319695 | 50936.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
