Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | BJD13_RS21015 | Not Available | Positive | 4293809 - 4294651 | 31157.4 |
| abc transporter atp-binding protein | BJD13_RS21020 | Not Available | Positive | 4294641 - 4295960 | 48014.2 |
| glycoside hydrolase family 99-like domain-containing protein | BJD13_RS21025 | Not Available | Positive | 4295981 - 4300228 | 159382.0 |
| hypothetical protein | BJD13_RS24810 | Not Available | Negative | 4300356 - 4301918 | 57977.4 |
| hypothetical protein | BJD13_RS24815 | Not Available | Negative | 4301938 - 4303917 | 71907.7 |
| gtra family protein | BJD13_RS21030 | Not Available | Negative | 4303917 - 4304318 | 14843.6 |
| nad(p)/fad-dependent oxidoreductase | BJD13_RS21035 | Not Available | Negative | 4304327 - 4305634 | 49379.5 |
| nad-dependent epimerase/dehydratase family protein | BJD13_RS21040 | Not Available | Negative | 4305658 - 4306602 | 35277.6 |
| sdr family oxidoreductase | BJD13_RS21045 | Not Available | Negative | 4306604 - 4307332 | 25550.2 |
| fad-binding oxidoreductase | BJD13_RS21050 | Not Available | Negative | 4307335 - 4308636 | 47672.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
