Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-carboxytetrahydropterin synthase qued | BJD13_RS20960 | Not Available | Negative | 4283499 - 4283852 | 13329.9 |
| dead/deah box helicase | BJD13_RS20965 | Not Available | Negative | 4283988 - 4285376 | 50103.5 |
| fumarylacetoacetate hydrolase family protein | BJD13_RS20975 | Not Available | Positive | 4285685 - 4286743 | 38070.2 |
| maleylacetoacetate isomerase | BJD13_RS20980 | Not Available | Positive | 4286775 - 4287437 | 24656.7 |
| pilt/pilu family type 4a pilus atpase | BJD13_RS20985 | Not Available | Negative | 4287835 - 4288968 | 41694.6 |
| duf4398 domain-containing protein | BJD13_RS20990 | Not Available | Positive | 4289067 - 4289450 | 13856.5 |
| membrane protein | BJD13_RS20995 | Not Available | Positive | 4289447 - 4290337 | 31486.6 |
| ydch family protein | BJD13_RS21000 | Not Available | Positive | 4290689 - 4290907 | 8493.43 |
| pyridoxal-phosphate dependent enzyme | BJD13_RS21005 | Not Available | Positive | 4291143 - 4292513 | 49621.6 |
| cystathionine gamma-synthase | BJD13_RS21010 | Not Available | Positive | 4292613 - 4293809 | 42573.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
