Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m3 family metallopeptidase | BJD13_RS20905 | Not Available | Positive | 4273694 - 4275718 | 74958.0 |
| sh3 domain-containing protein | BJD13_RS20910 | Not Available | Positive | 4275857 - 4276564 | 26387.6 |
| beta-ketoacyl-acp synthase i | BJD13_RS20915 | Not Available | Negative | 4276841 - 4278049 | 41919.0 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase faba | BJD13_RS20920 | Not Available | Negative | 4278049 - 4278564 | 18965.0 |
| dna polymerase iv | BJD13_RS20930 | Not Available | Positive | 4278909 - 4279988 | 39966.1 |
| phosphoglycolate phosphatase | BJD13_RS20935 | Not Available | Positive | 4280131 - 4280781 | 23192.1 |
| tfox/sxy family protein | BJD13_RS20940 | Not Available | Negative | 4281075 - 4281473 | 14315.7 |
| gaf domain-containing protein | BJD13_RS20945 | Not Available | Negative | 4281470 - 4281952 | 16984.1 |
| dethiobiotin synthase | BJD13_RS20950 | Not Available | Positive | 4282184 - 4282858 | 23631.6 |
| phasin family protein | BJD13_RS20955 | Not Available | Negative | 4282971 - 4283306 | 12108.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
