Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine--fructose-6-phosphate transaminase (isomerizing) | BJD13_RS20855 | Not Available | Positive | 4260979 - 4262808 | 66072.3 |
| hypothetical protein | BJD13_RS20860 | Not Available | Positive | 4263159 - 4263632 | 17533.0 |
| hypothetical protein | BJD13_RS20865 | Not Available | Positive | 4263866 - 4265005 | 40125.6 |
| peptidoglycan-binding protein | BJD13_RS24805 | Not Available | Negative | 4265136 - 4267001 | 67704.0 |
| hypothetical protein | BJD13_RS20875 | Not Available | Negative | 4267108 - 4267866 | 27281.4 |
| lactoylglutathione lyase | BJD13_RS20880 | Not Available | Negative | 4268190 - 4268714 | 19385.9 |
| copper resistance protein b | BJD13_RS20885 | Not Available | Negative | 4268876 - 4269970 | 39974.5 |
| copper resistance system multicopper oxidase | BJD13_RS20890 | Not Available | Negative | 4269967 - 4271772 | 66696.4 |
| copl family metal-binding regulatory protein | BJD13_RS20895 | Not Available | Negative | 4271859 - 4272314 | 15486.1 |
| plp-dependent cysteine synthase family protein | BJD13_RS20900 | Not Available | Positive | 4272406 - 4273509 | 39897.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
