Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chorismate mutase | BJD13_RS20805 | Not Available | Positive | 4249470 - 4250039 | 20336.0 |
| gtra family protein | BJD13_RS20810 | Not Available | Negative | 4250556 - 4250939 | 13934.4 |
| bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmu | BJD13_RS20815 | Not Available | Positive | 4251084 - 4252448 | 48060.6 |
| sensor histidine kinase | BJD13_RS20820 | Not Available | Negative | 4252749 - 4254095 | 50498.9 |
| sigma-54-dependent transcriptional regulator | BJD13_RS20825 | Not Available | Negative | 4254104 - 4255447 | 48614.0 |
| hypothetical protein | BJD13_RS20830 | Not Available | Negative | 4255608 - 4255913 | 10784.0 |
| abc transporter permease | BJD13_RS20835 | Not Available | Negative | 4256139 - 4257365 | 44685.9 |
| abc transporter permease | BJD13_RS20840 | Not Available | Negative | 4257421 - 4258722 | 47836.7 |
| abc transporter atp-binding protein | BJD13_RS20845 | Not Available | Negative | 4258734 - 4259453 | 26204.3 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS20850 | Not Available | Negative | 4259502 - 4260773 | 45140.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
