Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xopak family type iii secretion system effector | BJD13_RS25605 | Not Available | Negative | 4231117 - 4232049 | 33342.1 |
| hypothetical protein | BJD13_RS20715 | Not Available | Positive | 4232372 - 4232929 | 20391.6 |
| ompw/alkl family protein | BJD13_RS20720 | Not Available | Negative | 4233206 - 4233892 | 23830.6 |
| dna-deoxyinosine glycosylase | BJD13_RS20725 | Not Available | Positive | 4234033 - 4234593 | 20040.5 |
| duf2884 family protein | BJD13_RS20730 | Not Available | Positive | 4234817 - 4235581 | 27517.1 |
| dihydrolipoyllysine-residue acetyltransferase | BJD13_RS20735 | Not Available | Positive | 4235711 - 4237474 | 60130.9 |
| hypothetical protein | BJD13_RS20740 | Not Available | Positive | 4237471 - 4238118 | 22935.2 |
| dihydrolipoyl dehydrogenase | BJD13_RS20745 | Not Available | Positive | 4238135 - 4239958 | 63216.5 |
| hypothetical protein | BJD13_RS20750 | Not Available | Positive | 4240008 - 4240307 | 10818.9 |
| hypothetical protein | BJD13_RS20755 | Not Available | Negative | 4240446 - 4241258 | 29898.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
