Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | BJD13_RS20650 | Not Available | Negative | 4221676 - 4222482 | 28330.9 |
| duf1415 domain-containing protein | BJD13_RS20660 | Not Available | Negative | 4222885 - 4223445 | 20568.1 |
| alpha/beta hydrolase | BJD13_RS20665 | Not Available | Negative | 4223599 - 4224426 | 28596.2 |
| hybrid sensor histidine kinase/response regulator | BJD13_RS20670 | Not Available | Negative | 4224413 - 4226149 | 62804.8 |
| hypothetical protein | BJD13_RS20675 | Not Available | Negative | 4226142 - 4226603 | 16120.1 |
| yajq family cyclic di-gmp-binding protein | BJD13_RS20680 | Not Available | Negative | 4226749 - 4227234 | 18243.9 |
| dmt family transporter | BJD13_RS20685 | Not Available | Positive | 4227342 - 4228238 | 31820.3 |
| methionine abc transporter atp-binding protein | BJD13_RS20690 | Not Available | Positive | 4228436 - 4229443 | 36382.1 |
| methionine abc transporter permease | BJD13_RS20695 | Not Available | Positive | 4229440 - 4230135 | 24218.8 |
| metq/nlpa family abc transporter substrate-binding protein | BJD13_RS20700 | Not Available | Positive | 4230282 - 4231082 | 28824.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
