Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4031 domain-containing protein | BJD13_RS20550 | Not Available | Negative | 4203983 - 4204267 | 10352.5 |
| hypothetical protein | BJD13_RS20555 | Not Available | Negative | 4204276 - 4204860 | 20335.2 |
| flagellar motor protein motb | BJD13_RS20560 | Not Available | Negative | 4205109 - 4206266 | 40146.7 |
| flagellar motor stator protein mota | BJD13_RS20565 | Not Available | Negative | 4206277 - 4207131 | 30709.7 |
| mlic family protein | BJD13_RS20570 | Not Available | Negative | 4207229 - 4207717 | 16199.2 |
| peptide-methionine (r)-s-oxide reductase msrb | BJD13_RS20575 | Not Available | Negative | 4208064 - 4208528 | 16811.8 |
| hypothetical protein | BJD13_RS20580 | Not Available | Positive | 4208767 - 4209195 | 14674.9 |
| lrp/asnc ligand binding domain-containing protein | BJD13_RS20585 | Not Available | Negative | 4209274 - 4209753 | 18225.2 |
| d-amino acid dehydrogenase | BJD13_RS20590 | Not Available | Positive | 4209902 - 4211191 | 46570.6 |
| alanine racemase | BJD13_RS20595 | Not Available | Positive | 4211191 - 4212288 | 39738.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
