Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | BJD13_RS20495 | Not Available | Negative | 4191821 - 4192717 | 32232.8 |
| doda-type extradiol aromatic ring-opening family dioxygenase | BJD13_RS20500 | Not Available | Positive | 4193105 - 4193953 | 30782.0 |
| putative dna modification/repair radical sam protein | BJD13_RS20505 | Not Available | Positive | 4194160 - 4195404 | 46491.1 |
| udgx family uracil-dna binding protein | BJD13_RS20510 | Not Available | Positive | 4195653 - 4197089 | 54454.0 |
| fasciclin domain-containing protein | BJD13_RS20515 | Not Available | Negative | 4197607 - 4198164 | 18608.7 |
| na+/h+ antiporter | BJD13_RS20525 | Not Available | Positive | 4198826 - 4200502 | 60863.1 |
| abc transporter atp-binding protein | BJD13_RS20530 | Not Available | Positive | 4200799 - 4201743 | 34673.0 |
| abc transporter permease | BJD13_RS20535 | Not Available | Positive | 4201740 - 4202501 | 27782.8 |
| duf3297 family protein | BJD13_RS20540 | Not Available | Negative | 4202915 - 4203181 | 9673.38 |
| hypothetical protein | BJD13_RS20545 | Not Available | Positive | 4203348 - 4203899 | 20517.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
