Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | BJD13_RS24795 | Not Available | Positive | 4179731 - 4181032 | 47137.4 |
| lytr/algr family response regulator transcription factor | BJD13_RS20445 | Not Available | Positive | 4181029 - 4181805 | 28286.2 |
| hypothetical protein | BJD13_RS20450 | Not Available | Positive | 4181973 - 4182212 | 8310.96 |
| apc family permease | BJD13_RS20455 | Not Available | Positive | 4182535 - 4184130 | 56880.9 |
| hypothetical protein | BJD13_RS20460 | Not Available | Negative | 4184307 - 4184906 | 23359.2 |
| oxygenase mpab family protein | BJD13_RS20465 | Not Available | Positive | 4185408 - 4186391 | 36007.5 |
| m13 family metallopeptidase | BJD13_RS20470 | Not Available | Negative | 4186595 - 4188664 | 76461.8 |
| glycosyltransferase | BJD13_RS20475 | Not Available | Negative | 4188814 - 4189509 | 25456.8 |
| aldo/keto reductase | BJD13_RS20485 | Not Available | Negative | 4189890 - 4190885 | 35872.8 |
| flavodoxin family protein | BJD13_RS20490 | Not Available | Negative | 4191025 - 4191594 | 19955.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
