Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent transcriptional regulator | BJD13_RS20380 | Not Available | Positive | 4168447 - 4169730 | 47540.9 |
| hypothetical protein | BJD13_RS20385 | Not Available | Positive | 4169727 - 4169969 | 8980.64 |
| response regulator | BJD13_RS20390 | Not Available | Negative | 4169963 - 4170343 | 13630.3 |
| cher family methyltransferase | BJD13_RS20395 | Not Available | Positive | 4170552 - 4174094 | 132017.0 |
| hypothetical protein | BJD13_RS20405 | Not Available | Positive | 4174543 - 4175115 | 20150.2 |
| hypothetical protein | BJD13_RS20410 | Not Available | Negative | 4175255 - 4175593 | 12064.2 |
| manganese catalase family protein | BJD13_RS20415 | Not Available | Negative | 4175676 - 4176575 | 32203.0 |
| ferritin-like domain-containing protein | BJD13_RS20420 | Not Available | Negative | 4176712 - 4177218 | 18333.0 |
| hypothetical protein | BJD13_RS20430 | Not Available | Positive | 4177700 - 4177894 | 7131.65 |
| fad-dependent oxidoreductase | BJD13_RS20435 | Not Available | Negative | 4178206 - 4179420 | 44228.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
