Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf802 domain-containing protein | BJD13_RS20275 | Not Available | Negative | 4147571 - 4150228 | 93553.2 |
| duf3348 domain-containing protein | BJD13_RS20280 | Not Available | Negative | 4150239 - 4150988 | 27183.7 |
| hypothetical protein | BJD13_RS20285 | Not Available | Positive | 4151315 - 4151527 | 7514.99 |
| hypothetical protein | BJD13_RS20290 | Not Available | Negative | 4151971 - 4152192 | 7850.28 |
| ykgj family cysteine cluster protein | BJD13_RS20295 | Not Available | Negative | 4152202 - 4152552 | 13146.8 |
| hypothetical protein | BJD13_RS20300 | Not Available | Positive | 4152913 - 4153095 | 6629.37 |
| zinc-dependent alcohol dehydrogenase | BJD13_RS20305 | Not Available | Negative | 4153181 - 4154344 | 41537.2 |
| duf4142 domain-containing protein | BJD13_RS20310 | Not Available | Positive | 4154613 - 4155227 | 21958.6 |
| duf3606 domain-containing protein | BJD13_RS20315 | Not Available | Positive | 4155328 - 4155510 | 7152.25 |
| abc transporter atp-binding protein | BJD13_RS20320 | Not Available | Negative | 4155703 - 4157478 | 63985.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
