Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna/rna non-specific endonuclease | BJD13_RS20225 | Not Available | Negative | 4135460 - 4136197 | 26494.0 |
| rid family hydrolase | BJD13_RS20230 | Not Available | Negative | 4136660 - 4137061 | 14492.3 |
| lysr family transcriptional regulator | BJD13_RS20235 | Not Available | Positive | 4137169 - 4138113 | 34432.7 |
| m14 family metallopeptidase | BJD13_RS20240 | Not Available | Negative | 4138135 - 4139988 | 68350.9 |
| abc transporter atp-binding protein | BJD13_RS20245 | Not Available | Positive | 4140233 - 4140955 | 25215.3 |
| abc transporter permease | BJD13_RS20250 | Not Available | Positive | 4140966 - 4142402 | 52217.6 |
| duf3526 domain-containing protein | BJD13_RS20255 | Not Available | Positive | 4142402 - 4143670 | 46790.7 |
| tonb-dependent siderophore receptor | BJD13_RS20260 | Not Available | Positive | 4143754 - 4145901 | 77772.1 |
| duf2894 domain-containing protein | BJD13_RS20265 | Not Available | Negative | 4146241 - 4146906 | 23968.6 |
| ompa family protein | BJD13_RS20270 | Not Available | Negative | 4146903 - 4147574 | 23841.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
