Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isopenicillin n synthase family dioxygenase | BJD13_RS03080 | Not Available | Positive | 323838 - 324776 | 34948.2 |
| methylamine utilization protein | BJD13_RS03085 | Not Available | Positive | 324965 - 325648 | 24264.2 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | BJD13_RS03090 | Not Available | Positive | 325645 - 328011 | 86236.6 |
| duf3034 family protein | BJD13_RS03095 | Not Available | Positive | 328008 - 328880 | 30492.4 |
| group i truncated hemoglobin | BJD13_RS03100 | Not Available | Positive | 328880 - 329308 | 16036.5 |
| sdr family nad(p)-dependent oxidoreductase | BJD13_RS03105 | Not Available | Negative | 329513 - 330313 | 28861.0 |
| triose-phosphate isomerase | BJD13_RS03110 | Not Available | Positive | 330426 - 331181 | 26198.3 |
| preprotein translocase subunit secg | BJD13_RS03115 | Not Available | Positive | 331215 - 331688 | 15613.8 |
| Trna-leu | Not Available | Not Available | Positive | 331738 - 331822 | Not Available |
| nadh-quinone oxidoreductase subunit a | BJD13_RS03125 | Not Available | Positive | 331925 - 332281 | 13598.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
