Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS25080 | Not Available | Positive | 4120525 - 4120692 | 6341.67 |
| fad-dependent oxidoreductase | BJD13_RS25595 | Not Available | Negative | 4121320 - 4121847 | 18924.4 |
| fad-dependent oxidoreductase | BJD13_RS25600 | Not Available | Negative | 4121847 - 4122470 | 21878.9 |
| nuclear transport factor 2 family protein | BJD13_RS20140 | Not Available | Negative | 4122717 - 4123124 | 14582.5 |
| sdr family oxidoreductase | BJD13_RS20145 | Not Available | Negative | 4123181 - 4123963 | 26873.4 |
| lysr family transcriptional regulator | BJD13_RS20150 | Not Available | Positive | 4124095 - 4125018 | 33333.1 |
| pard-like family protein | BJD13_RS20155 | Not Available | Positive | 4125267 - 4125491 | 8200.94 |
| type i methionyl aminopeptidase | BJD13_RS20160 | Not Available | Positive | 4125488 - 4126264 | 28268.9 |
| hypothetical protein | BJD13_RS20165 | Not Available | Negative | 4126295 - 4126840 | 20671.8 |
| chloride channel protein | BJD13_RS20170 | Not Available | Positive | 4127100 - 4128857 | 61548.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
