Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase family protein | BJD13_RS19825 | Not Available | Positive | 4072353 - 4073630 | 45584.4 |
| glycosyltransferase family 2 protein | BJD13_RS19830 | Not Available | Negative | 4073827 - 4074651 | 31067.9 |
| cdp-glycerol glycerophosphotransferase family protein | BJD13_RS19835 | Not Available | Positive | 4074652 - 4075710 | 38678.4 |
| ph domain-containing protein | BJD13_RS19840 | Not Available | Negative | 4075871 - 4077376 | 55803.4 |
| ph domain-containing protein | BJD13_RS19845 | Not Available | Negative | 4077373 - 4077849 | 17444.1 |
| gtp cyclohydrolase ii riba | BJD13_RS19850 | Not Available | Negative | 4077988 - 4079121 | 39469.3 |
| gnat family n-acetyltransferase | BJD13_RS19860 | Not Available | Positive | 4079367 - 4079888 | 19076.6 |
| lauroyl acyltransferase | BJD13_RS19865 | Not Available | Negative | 4079898 - 4080914 | 37299.7 |
| d-aminoacyl-trna deacylase | BJD13_RS19870 | Not Available | Positive | 4080913 - 4081353 | 15482.7 |
| hypothetical protein | BJD13_RS24790 | Not Available | Negative | 4118006 - 4119640 | 58261.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
