Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase i | BJD13_RS19775 | Not Available | Negative | 4059523 - 4062015 | 92050.9 |
| rdd family protein | BJD13_RS19780 | Not Available | Negative | 4062198 - 4063475 | 43935.2 |
| pilin | BJD13_RS19785 | Not Available | Negative | 4063517 - 4064242 | 25625.5 |
| duf494 family protein | BJD13_RS19790 | Not Available | Negative | 4064283 - 4064756 | 18130.5 |
| dna-processing protein dpra | BJD13_RS19795 | Not Available | Negative | 4064799 - 4065944 | 39650.5 |
| lysm peptidoglycan-binding domain-containing protein | BJD13_RS19800 | Not Available | Negative | 4066016 - 4067152 | 41258.1 |
| peptide deformylase | BJD13_RS19805 | Not Available | Positive | 4067284 - 4067796 | 19096.2 |
| methionyl-trna formyltransferase | BJD13_RS19810 | Not Available | Positive | 4068184 - 4069107 | 32822.9 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | BJD13_RS19815 | Not Available | Positive | 4069107 - 4070417 | 47019.2 |
| arnt family glycosyltransferase | BJD13_RS19820 | Not Available | Positive | 4070466 - 4072187 | 64306.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
