Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS19720 | Not Available | Positive | 4048897 - 4049922 | 36198.3 |
| duf3106 domain-containing protein | BJD13_RS19725 | Not Available | Positive | 4049906 - 4050508 | 21886.3 |
| duf3667 domain-containing protein | BJD13_RS19730 | Not Available | Negative | 4050681 - 4051847 | 42665.0 |
| mate family efflux transporter | BJD13_RS19735 | Not Available | Positive | 4052116 - 4053492 | 48116.1 |
| signal peptide peptidase sppa | BJD13_RS19740 | Not Available | Positive | 4053577 - 4055478 | 68206.8 |
| hypothetical protein | BJD13_RS19745 | Not Available | Negative | 4055772 - 4055987 | 7595.07 |
| sdr family oxidoreductase | BJD13_RS19755 | Not Available | Positive | 4056322 - 4057098 | 28145.1 |
| duf4124 domain-containing protein | BJD13_RS19760 | Not Available | Negative | 4057267 - 4057917 | 22567.7 |
| hypothetical protein | BJD13_RS19765 | Not Available | Negative | 4057941 - 4058717 | 27498.3 |
| sua5/ycio/yrdc/ywlc family protein | BJD13_RS19770 | Not Available | Negative | 4058949 - 4059512 | 19853.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
