Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| permease-like cell division protein ftsx | BJD13_RS19670 | Not Available | Positive | 4038158 - 4039108 | 33657.1 |
| response regulator | BJD13_RS19675 | Not Available | Positive | 4039117 - 4039959 | 30952.6 |
| uracil-dna glycosylase | BJD13_RS19680 | Not Available | Positive | 4039956 - 4040681 | 26744.1 |
| rna polymerase sigma factor rpoh | BJD13_RS19685 | Not Available | Positive | 4040880 - 4041755 | 32783.9 |
| trimeric intracellular cation channel family protein | BJD13_RS19690 | Not Available | Negative | 4041834 - 4042448 | 21123.3 |
| nad(p)/fad-dependent oxidoreductase | BJD13_RS19695 | Not Available | Negative | 4042499 - 4043791 | 46458.0 |
| hypothetical protein | BJD13_RS19700 | Not Available | Positive | 4043910 - 4044440 | 18741.1 |
| nyn domain-containing protein | BJD13_RS19705 | Not Available | Positive | 4044437 - 4045279 | 29886.7 |
| glutathione s-transferase family protein | BJD13_RS19710 | Not Available | Positive | 4045282 - 4045932 | 23925.4 |
| primosomal protein n' | BJD13_RS19715 | Not Available | Negative | 4046205 - 4048427 | 79794.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
