Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS19615 | Not Available | Positive | 4025512 - 4026069 | 17872.6 |
| nadp-dependent isocitrate dehydrogenase | BJD13_RS19620 | Not Available | Positive | 4026427 - 4028658 | 80409.7 |
| hypothetical protein | BJD13_RS19625 | Not Available | Negative | 4028730 - 4028990 | 9814.81 |
| lysr substrate-binding domain-containing protein | BJD13_RS19630 | Not Available | Positive | 4029092 - 4030036 | 34412.6 |
| bifunctional isocitrate dehydrogenase kinase/phosphatase | BJD13_RS19635 | Not Available | Positive | 4030033 - 4031772 | 66758.9 |
| hypothetical protein | BJD13_RS19645 | Not Available | Positive | 4032061 - 4032945 | 31742.9 |
| transcription termination factor rho | BJD13_RS19650 | Not Available | Negative | 4033053 - 4034927 | 68777.2 |
| thioredoxin trxa | BJD13_RS19655 | Not Available | Negative | 4035144 - 4035485 | 12213.8 |
| atp-dependent rna helicase rhlb | BJD13_RS19660 | Not Available | Positive | 4035684 - 4037399 | 62088.5 |
| cell division atp-binding protein ftse | BJD13_RS19665 | Not Available | Positive | 4037475 - 4038161 | 25001.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
