Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family hydrolase | BJD13_RS19565 | Not Available | Positive | 4010515 - 4011267 | 27476.6 |
| hypothetical protein | BJD13_RS19570 | Not Available | Positive | 4011405 - 4011977 | 20997.6 |
| hypothetical protein | BJD13_RS19575 | Not Available | Positive | 4012272 - 4012889 | 22402.4 |
| voc family protein | BJD13_RS19580 | Not Available | Positive | 4013053 - 4014420 | 49810.0 |
| efflux rnd transporter permease subunit | BJD13_RS19585 | Not Available | Negative | 4014611 - 4017751 | 111535.0 |
| efflux rnd transporter permease subunit | BJD13_RS19590 | Not Available | Negative | 4017885 - 4021133 | 115305.0 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS19595 | Not Available | Negative | 4021227 - 4022471 | 43942.2 |
| m20 family metallopeptidase | BJD13_RS19600 | Not Available | Positive | 4022731 - 4024038 | 46284.8 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | BJD13_RS19605 | Not Available | Positive | 4024195 - 4025010 | 29686.1 |
| lysm peptidoglycan-binding domain-containing protein | BJD13_RS19610 | Not Available | Positive | 4025113 - 4025406 | 10489.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
