Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| apc family permease | BJD13_RS19510 | Not Available | Negative | 4001306 - 4002622 | 45798.5 |
| l,d-transpeptidase family protein | BJD13_RS19515 | Not Available | Negative | 4002619 - 4003395 | 27877.3 |
| dipeptide epimerase | BJD13_RS19520 | Not Available | Negative | 4003655 - 4004752 | 38527.8 |
| sh3 domain-containing protein | BJD13_RS19525 | Not Available | Negative | 4004749 - 4006161 | 50598.9 |
| n-acetylmuramoyl-l-alanine amidase | BJD13_RS19530 | Not Available | Positive | 4006534 - 4007340 | 29106.1 |
| m15 family metallopeptidase | BJD13_RS19535 | Not Available | Positive | 4007432 - 4008178 | 27382.6 |
| cpxcg motif-containing cysteine-rich protein | BJD13_RS19540 | Not Available | Positive | 4008464 - 4008661 | 7221.33 |
| hypothetical protein | BJD13_RS19545 | Not Available | Positive | 4008887 - 4009264 | 13218.2 |
| nfed family protein | BJD13_RS19550 | Not Available | Positive | 4009491 - 4009844 | 11368.8 |
| ef-hand domain-containing protein | BJD13_RS19560 | Not Available | Positive | 4010077 - 4010478 | 13038.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
